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13:52520574 C / T


Filter Status
PASS
dbSNP
rs121907996
Allele Frequency
3.332e-05
Filtering AF
2e-05 (European (Non-Finnish))
Allele Count
4 / 120032
UCSC
13-52520574-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4 66474 0 6.017e-05
East Asian 0 8612 0 0
Other 0 884 0 0
African 0 9742 0 0
Latino 0 11488 0 0
South Asian 0 16360 0 0
European (Finnish) 0 6472 0 0
Total 4 120032 0 3.332e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.