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13:52523836 C / T


Filter Status
PASS
dbSNP
rs28942076
Allele Frequency
1.662e-05
Filtering AF
0 (None)
Allele Count
2 / 120362
UCSC
13-52523836-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 66518 0 1.503e-05
East Asian 0 8614 0 0
Other 0 896 0 0
African 1 9718 0 0.0001029
Latino 0 11532 0 0
South Asian 0 16472 0 0
European (Finnish) 0 6612 0 0
Total 2 120362 0 1.662e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.