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13:52539170 C / G


Filter Status
PASS
dbSNP
rs137853280
Allele Frequency
3.314e-05
Filtering AF
4.9e-05 (South Asian)
Allele Count
4 / 120716
UCSC
13-52539170-C-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 66710 0 0
East Asian 1 8624 0 0.000116
Other 0 900 0 0
African 0 9794 0 0
Latino 0 11570 0 0
South Asian 3 16506 0 0.0001818
European (Finnish) 0 6612 0 0
Total 4 120716 0 3.314e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.