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13:52542680 A / G


Filter Status
PASS
dbSNP
rs138427376
Allele Frequency
0.002981
Filtering AF
0.003294 (European (Non-Finnish))
Allele Count
360 / 120748
UCSC
13-52542680-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 245 66726 0 0.003672
East Asian 0 8626 0 0
Other 2 900 0 0.002222
African 9 9800 0 0.0009184
Latino 13 11572 0 0.001123
South Asian 6 16510 0 0.0003634
European (Finnish) 85 6614 0 0.01285
Total 360 120748 0 0.002981

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.