Interested in working on the development of this resource? Apply here.

15:28230318 C / T


Filter Status
PASS
dbSNP
rs1800407
Allele Frequency
0.04471
Filtering AF
0.05844 (European (Non-Finnish))
Allele Count
5295 / 118442
UCSC
15-28230318-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3918 65292 127 0.06001
East Asian 3 8562 0 0.0003504
Other 44 862 2 0.05104
African 123 9916 1 0.0124
Latino 408 11336 8 0.03599
South Asian 529 16258 15 0.03254
European (Finnish) 270 6216 11 0.04344
Total 5295 118442 164 0.04471

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.