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15:28260053 G / A


Filter Status
PASS
dbSNP
rs1800401
Allele Frequency
0.06564
Filtering AF
0.1309 (African)
Allele Count
7851 / 119616
UCSC
15-28260053-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3631 66162 121 0.05488
East Asian 64 8612 0 0.007431
Other 60 878 2 0.06834
African 1398 10218 86 0.1368
Latino 354 11430 8 0.03097
South Asian 2132 16298 161 0.1308
European (Finnish) 212 6018 5 0.03523
Total 7851 119616 383 0.06564

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.