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15:39910431 A / G


Filter Status
PASS
dbSNP
rs10152640
Allele Frequency
0.3145
Filtering AF
0.6536 (African)
Allele Count
36960 / 117508
UCSC
15-39910431-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 1 transcripts in 1 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 18667 64862 2655 0.2878
East Asian 2989 8602 512 0.3475
Other 275 886 38 0.3104
African 6283 9414 2112 0.6674
Latino 2120 11530 234 0.1839
South Asian 4515 15608 636 0.2893
European (Finnish) 2111 6606 326 0.3196
Total 36960 117508 6513 0.3145

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.