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15:40913840 G / T


Filter Status
PASS
dbSNP
rs2412541
Allele Frequency
0.7455
Filtering AF
0.8298 (European (Non-Finnish))
Allele Count
89762 / 120398
UCSC
15-40913840-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 55597 66536 23264 0.8356
East Asian 2776 8612 460 0.3223
Other 709 890 284 0.7966
African 7468 9780 2859 0.7636
Latino 5367 11552 1388 0.4646
South Asian 12313 16416 4688 0.7501
European (Finnish) 5532 6612 2307 0.8367
Total 89762 120398 35250 0.7455

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.