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15:42652260 C / CT


Filter Status
PASS
dbSNP
rs121434546
Allele Frequency
1.649e-05
Filtering AF
3.4e-05 (African)
Allele Count
2 / 121278
UCSC
15-42652260-C-CT
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 66710 0 0
East Asian 0 8652 0 0
Other 0 908 0 0
African 2 10310 0 0.000194
Latino 0 11574 0 0
South Asian 0 16510 0 0
European (Finnish) 0 6614 0 0
Total 2 121278 0 1.649e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.