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15:42984288 A / G


Warning! This variant is only covered in 8668 individuals (adjusted allele number = 17336).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs16957063
Allele Frequency
0.04442
Filtering AF
0.1613 (African)
Allele Count
770 / 17336
UCSC
15-42984288-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 132 6910 1 0.0191
East Asian 17 332 0 0.0512
Other 10 166 1 0.06024
African 314 1770 22 0.1774
Latino 3 296 0 0.01014
South Asian 294 7856 13 0.03742
European (Finnish) 0 6 0 0
Total 770 17336 37 0.04442

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.