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15:45968435 T / C


Filter Status
PASS
dbSNP
rs1044032
Allele Frequency
0.243
Filtering AF
0.4348 (East Asian)
Allele Count
29479 / 121336
UCSC
15-45968435-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 13567 66712 1403 0.2034
East Asian 3859 8642 843 0.4465
Other 222 908 27 0.2445
African 1185 10384 71 0.1141
Latino 2745 11568 344 0.2373
South Asian 6126 16508 1184 0.3711
European (Finnish) 1775 6614 242 0.2684
Total 29479 121336 4114 0.243

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.