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15:48796042 G / A


Filter Status
PASS
dbSNP
rs140603
Allele Frequency
0.0009637
Filtering AF
0.008262 (African)
Allele Count
117 / 121410
UCSC
15-48796042-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3 66738 0 4.495e-05
East Asian 0 8654 0 0
Other 0 908 0 0
African 102 10406 0 0.009802
Latino 10 11578 0 0.0008637
South Asian 0 16512 0 0
European (Finnish) 2 6614 0 0.0003024
Total 117 121410 0 0.0009637

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.