Interested in working on the development of this resource? Apply here.

15:50534514 T / G


Filter Status
PASS
dbSNP
rs2073440
Allele Frequency
0.03687
Filtering AF
0.1319 (African)
Allele Count
4471 / 121262
UCSC
15-50534514-T-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1864 66616 25 0.02798
East Asian 761 8644 38 0.08804
Other 26 906 1 0.0287
African 1433 10394 107 0.1379
Latino 172 11576 3 0.01486
South Asian 165 16512 3 0.009993
European (Finnish) 50 6614 1 0.00756
Total 4471 121262 178 0.03687

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.