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15:72643444 A / C


Filter Status
PASS
dbSNP
rs117160567
Allele Frequency
0.01969
Filtering AF
0.04353 (South Asian)
Allele Count
2332 / 118464
UCSC
15-72643444-A-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 16 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1398 65348 18 0.02139
East Asian 3 8260 0 0.0003632
Other 13 890 0 0.01461
African 42 10074 0 0.004169
Latino 74 11210 0 0.006601
South Asian 747 16142 25 0.04628
European (Finnish) 55 6540 0 0.00841
Total 2332 118464 43 0.01969

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.