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15:78882925 G / A


Filter Status
PASS
dbSNP
rs16969968
Allele Frequency
0.2677
Filtering AF
0.3496 (European (Non-Finnish))
Allele Count
32400 / 121044
UCSC
15-78882925-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 9 transcripts in 3 genes:

missense non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 23558 66660 4194 0.3534
East Asian 260 8644 3 0.03008
Other 277 902 41 0.3071
African 619 10204 29 0.06066
Latino 1649 11566 132 0.1426
South Asian 3862 16462 516 0.2346
European (Finnish) 2175 6606 366 0.3292
Total 32400 121044 5281 0.2677

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.