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15:89388905 C / T


Filter Status
PASS
dbSNP
rs16942341
Allele Frequency
0.04055
Filtering AF
0.1461 (African)
Allele Count
4891 / 120630
UCSC
15-89388905-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1987 66624 38 0.02982
East Asian 0 8620 0 0
Other 40 898 2 0.04454
African 1497 9816 111 0.1525
Latino 259 11558 1 0.02241
South Asian 1011 16504 37 0.06126
European (Finnish) 97 6610 2 0.01467
Total 4891 120630 191 0.04055

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.