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15:89402239 T / C


Filter Status
PASS
dbSNP
rs1042631
Allele Frequency
0.7405
Filtering AF
0.8323 (African)
Allele Count
89318 / 120620
UCSC
15-89402239-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 52914 66622 21029 0.7942
East Asian 5004 8604 1438 0.5816
Other 645 900 231 0.7167
African 8306 9800 3519 0.8476
Latino 6488 11572 1863 0.5607
South Asian 11246 16510 3854 0.6812
European (Finnish) 4715 6612 1669 0.7131
Total 89318 120620 33603 0.7405

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.