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15:90335788 C / T

Note: This variant is found in phase with 15-90335787-G-A in 1 individuals.

Filter Status
PASS
dbSNP
rs25651
Allele Frequency
0.3099
Filtering AF
0.4854 (African)
Allele Count
37420 / 120742
UCSC
15-90335788-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 20486 66432 3167 0.3084
East Asian 2053 8608 240 0.2385
Other 267 896 39 0.298
African 5140 10348 1306 0.4967
Latino 2605 11454 295 0.2274
South Asian 5550 16448 1012 0.3374
European (Finnish) 1319 6556 119 0.2012
Total 37420 120742 6178 0.3099

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.