Interested in working on the development of this resource? Apply here.

16:226986 G / A


Warning! This variant is only covered in 5539 individuals (adjusted allele number = 11078).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
VQSRTrancheSNP99.60to99.80
dbSNP
rs33960522
Allele Frequency
0.0004513
Filtering AF
0.000497 (European (Non-Finnish))
Allele Count
5 / 11078
UCSC
16-226986-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 10 transcripts in 4 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5 3962 0 0.001262
East Asian 0 310 0 0
Other 0 130 0 0
African 0 846 0 0
Latino 0 392 0 0
South Asian 0 5320 0 0
European (Finnish) 0 118 0 0
Total 5 11078 0 0.0004513

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.