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16:310380 G / A


Warning! This variant is only covered in 1669 individuals (adjusted allele number = 3338).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs13335629
Allele Frequency
0.02217
Filtering AF
0.09396 (African)
Allele Count
74 / 3338
UCSC
16-310380-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 16 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 1956 0 0
East Asian 0 272 0 0
Other 0 38 0 0
African 72 624 5 0.1154
Latino 2 168 0 0.0119
South Asian 0 142 0 0
European (Finnish) 0 138 0 0
Total 74 3338 5 0.02217

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.