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16:31276811 G / A


Warning! This variant is only covered in 30915 individuals (adjusted allele number = 61830).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1143679
Allele Frequency
0.1455
Filtering AF
0.1733 (European (Non-Finnish))
Allele Count
8997 / 61830
UCSC
16-31276811-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 6326 35754 377 0.1769
East Asian 29 3856 0 0.007521
Other 86 494 5 0.1741
African 730 4912 39 0.1486
Latino 489 4282 16 0.1142
South Asian 864 9960 32 0.08675
European (Finnish) 473 2572 19 0.1839
Total 8997 61830 488 0.1455

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.