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16:48258198 C / T


Filter Status
PASS
dbSNP
rs17822931
Allele Frequency
0.2251
Filtering AF
0.8654 (East Asian)
Allele Count
27269 / 121138
UCSC
16-48258198-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 8856 66608 593 0.133
East Asian 7629 8650 3405 0.882
Other 188 908 22 0.207
African 302 10390 10 0.02907
Latino 2007 11562 193 0.1736
South Asian 6729 16410 1422 0.4101
European (Finnish) 1558 6610 189 0.2357
Total 27269 121138 5834 0.2251

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.