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16:51175658 T / C


Warning! This variant is only covered in 42111 individuals (adjusted allele number = 84222).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs13336129
Allele Frequency
0.07004
Filtering AF
0.08792 (European (Non-Finnish))
Allele Count
5899 / 84222
UCSC
16-51175658-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4187 46418 64 0.0902
East Asian 182 6078 0 0.02994
Other 39 626 0 0.0623
African 411 6958 8 0.05907
Latino 287 7870 2 0.03647
South Asian 399 11504 3 0.03468
European (Finnish) 394 4768 9 0.08263
Total 5899 84222 86 0.07004

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.