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16:56938290 G / A


Filter Status
PASS
dbSNP
rs2289116
Allele Frequency
0.1192
Filtering AF
0.1957 (Latino)
Allele Count
14469 / 121394
UCSC
16-56938290-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 7 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7089 66728 369 0.1062
East Asian 627 8648 19 0.0725
Other 100 908 5 0.1101
African 1992 10406 179 0.1914
Latino 2345 11578 221 0.2025
South Asian 1531 16512 91 0.09272
European (Finnish) 785 6614 43 0.1187
Total 14469 121394 927 0.1192

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.