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16:78133671 C / T


Warning! This variant is only covered in 11846 individuals (adjusted allele number = 23692).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs11545028
Allele Frequency
0.372
Filtering AF
0.4352 (European (Non-Finnish))
Allele Count
8813 / 23692
UCSC
16-78133671-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 13 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5323 11956 880 0.4452
East Asian 334 908 28 0.3678
Other 61 190 14 0.3211
African 515 2114 56 0.2436
Latino 325 786 35 0.4135
South Asian 2123 7512 290 0.2826
European (Finnish) 132 226 26 0.5841
Total 8813 23692 1329 0.372

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.