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16:89212452 G / A


Filter Status
PASS
dbSNP
rs201954387
Allele Frequency
1.665e-05
Filtering AF
5e-06 (European (Non-Finnish))
Allele Count
2 / 120090
UCSC
16-89212452-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2 66212 0 3.021e-05
East Asian 0 8642 0 0
Other 0 892 0 0
African 0 10304 0 0
Latino 0 11554 0 0
South Asian 0 15888 0 0
European (Finnish) 0 6598 0 0
Total 2 120090 0 1.665e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.