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16:89985844 G / T


Filter Status
PASS
dbSNP
rs1805005
Allele Frequency
0.08321
Filtering AF
0.1256 (European (Non-Finnish))
Allele Count
9974 / 119870
UCSC
16-89985844-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 21 transcripts in 6 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 8444 66010 600 0.1279
East Asian 1 8594 0 0.0001164
Other 95 892 10 0.1065
African 190 9702 3 0.01958
Latino 700 11548 32 0.06062
South Asian 176 16510 10 0.01066
European (Finnish) 368 6614 11 0.05564
Total 9974 119870 666 0.08321

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.