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16:89986117 C / T


Filter Status
PASS
dbSNP
rs1805007
Allele Frequency
0.04488
Filtering AF
0.06811 (European (Non-Finnish))
Allele Count
5382 / 119912
UCSC
16-89986117-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 21 transcripts in 6 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4603 65946 187 0.0698
East Asian 8 8566 0 0.0009339
Other 19 888 0 0.0214
African 140 9914 1 0.01412
Latino 91 11522 0 0.007898
South Asian 70 16468 0 0.004251
European (Finnish) 451 6608 14 0.06825
Total 5382 119912 202 0.04488

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.