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16:89986130 T / C


Filter Status
PASS
dbSNP
rs1110400
Allele Frequency
0.005271
Filtering AF
0.007866 (European (Non-Finnish))
Allele Count
631 / 119708
UCSC
16-89986130-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 21 transcripts in 6 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 556 65824 1 0.008447
East Asian 0 8564 0 0
Other 5 884 0 0.005656
African 18 9856 1 0.001826
Latino 31 11514 0 0.002692
South Asian 6 16470 0 0.0003643
European (Finnish) 15 6596 0 0.002274
Total 631 119708 2 0.005271

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.