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17:17715101 G / A


Warning! This variant is only covered in 6180 individuals (adjusted allele number = 12360).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs11868035
Allele Frequency
0.5484
Filtering AF
0.7551 (East Asian)
Allele Count
6778 / 12360
UCSC
17-17715101-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 20 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1177 3634 193 0.3239
East Asian 172 200 74 0.86
Other 73 132 21 0.553
African 184 572 28 0.3217
Latino 88 188 19 0.4681
South Asian 5076 7620 1697 0.6661
European (Finnish) 8 14 1 0.5714
Total 6778 12360 2033 0.5484

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.