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17:19812541 T / C


Filter Status
PASS
dbSNP
rs203462
Allele Frequency
0.3737
Filtering AF
0.5756 (African)
Allele Count
45342 / 121348
UCSC
17-19812541-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 4 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 25278 66702 4839 0.379
East Asian 1577 8644 145 0.1824
Other 306 906 50 0.3377
African 6117 10404 1819 0.5879
Latino 4893 11570 1028 0.4229
South Asian 4880 16508 768 0.2956
European (Finnish) 2291 6614 409 0.3464
Total 45342 121348 9058 0.3737

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.