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17:33331575 C / T


Filter Status
PASS
dbSNP
rs1052536
Allele Frequency
0.4156
Filtering AF
0.4608 (European (Non-Finnish))
Allele Count
48573 / 116862
UCSC
17-33331575-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 13 transcripts in 3 genes:

non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 30123 64758 6992 0.4652
East Asian 2524 8416 393 0.2999
Other 397 866 86 0.4584
African 1565 10196 126 0.1535
Latino 4721 11202 998 0.4214
South Asian 5516 14942 1048 0.3692
European (Finnish) 3727 6482 1069 0.575
Total 48573 116862 10712 0.4156

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.