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17:3550800 G / A


Filter Status
PASS
dbSNP
rs35086888
Allele Frequency
0.005447
Filtering AF
0.0558 (African)
Allele Count
660 / 121160
UCSC
17-3550800-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 7 66578 0 0.0001051
East Asian 1 8646 0 0.0001157
Other 0 908 0 0
African 619 10370 13 0.05969
Latino 28 11556 0 0.002423
South Asian 5 16500 0 0.000303
European (Finnish) 0 6602 0 0
Total 660 121160 13 0.005447

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.