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17:41245471 C / T


Filter Status
PASS
dbSNP
rs4986850
Allele Frequency
0.05681
Filtering AF
0.07416 (European (Non-Finnish))
Allele Count
6893 / 121324
UCSC
17-41245471-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 5063 66698 200 0.07591
East Asian 2 8654 0 0.0002311
Other 62 906 2 0.06843
African 231 10400 1 0.02221
Latino 352 11552 5 0.03047
South Asian 583 16504 19 0.03532
European (Finnish) 600 6610 30 0.09077
Total 6893 121324 257 0.05681

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.