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17:43884402 C / T


Filter Status
PASS
dbSNP
rs12936511
Allele Frequency
0.03197
Filtering AF
0.04304 (European (Non-Finnish))
Allele Count
3801 / 118884
UCSC
17-43884402-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 11 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2932 66072 63 0.04438
East Asian 93 8588 1 0.01083
Other 34 868 0 0.03917
African 94 9680 1 0.009711
Latino 161 11380 2 0.01415
South Asian 226 16068 7 0.01407
European (Finnish) 261 6228 3 0.04191
Total 3801 118884 77 0.03197

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.