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17:43907896 T / C


Filter Status
PASS
dbSNP
rs16940665
Allele Frequency
0.1454
Filtering AF
0.2081 (European (Non-Finnish))
Allele Count
17473 / 120172
UCSC
17-43907896-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 13 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 13997 66318 1513 0.2111
East Asian 7 8586 0 0.0008153
Other 124 898 9 0.1381
African 414 10000 15 0.0414
Latino 1264 11564 84 0.1093
South Asian 1239 16192 54 0.07652
European (Finnish) 428 6614 15 0.06471
Total 17473 120172 1690 0.1454

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.