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17:45822092 C / T


Filter Status
PASS
dbSNP
rs11650354
Allele Frequency
0.1591
Filtering AF
0.1875 (South Asian)
Allele Count
18894 / 118750
UCSC
17-45822092-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 11727 66002 1033 0.1777
East Asian 371 8634 11 0.04297
Other 127 868 13 0.1463
African 1209 10322 66 0.1171
Latino 1123 11556 63 0.09718
South Asian 2854 14754 258 0.1934
European (Finnish) 1483 6614 155 0.2242
Total 18894 118750 1599 0.1591

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.