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17:48271433 A / G


Filter Status
PASS
dbSNP
rs1007086
Allele Frequency
0.6569
Filtering AF
0.7242 (Latino)
Allele Count
79610 / 121188
UCSC
17-48271433-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 46579 66646 16292 0.6989
East Asian 4660 8622 1258 0.5405
Other 597 904 202 0.6604
African 5257 10368 1355 0.507
Latino 8526 11564 3142 0.7373
South Asian 9172 16508 2616 0.5556
European (Finnish) 4819 6576 1767 0.7328
Total 79610 121188 26632 0.6569

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.