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17:73761124 C / T


Warning! This variant is only covered in 36501 individuals (adjusted allele number = 73002).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
VQSRTrancheSNP99.60to99.80
dbSNP
rs104894576
Allele Frequency
1.37e-05
Filtering AF
0 (None)
Allele Count
1 / 73002
UCSC
17-73761124-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 41186 0 2.428e-05
East Asian 0 5434 0 0
Other 0 502 0 0
African 0 5562 0 0
Latino 0 5932 0 0
South Asian 0 12370 0 0
European (Finnish) 0 2016 0 0
Total 1 73002 0 1.37e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.