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17:78063562 G / T


Filter Status
PASS
dbSNP
rs370706991
Allele Frequency
3.315e-05
Filtering AF
2e-05 (European (Non-Finnish))
Allele Count
4 / 120676
UCSC
17-78063562-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4 66674 0 5.999e-05
East Asian 0 8622 0 0
Other 0 894 0 0
African 0 9788 0 0
Latino 0 11572 0 0
South Asian 0 16512 0 0
European (Finnish) 0 6614 0 0
Total 4 120676 0 3.315e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.