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17:78178893 C / T

Warning! This variant is found in phase with 17-78178895-G-A in 1 individuals, altering its functional interpretation
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Filter Status
PASS
dbSNP
rs11652075
Allele Frequency
0.4244
Filtering AF
0.4867 (European (Non-Finnish))
Allele Count
49344 / 116254
UCSC
17-78178893-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 18 transcripts in 3 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 31578 64276 7605 0.4913
East Asian 3964 8384 924 0.4728
Other 370 848 78 0.4363
African 2389 9720 309 0.2458
Latino 2803 11052 355 0.2536
South Asian 5547 16002 952 0.3466
European (Finnish) 2693 5972 557 0.4509
Total 49344 116254 10780 0.4244

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.