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17:78188471 C / T


Filter Status
PASS
dbSNP
rs104894638
Allele Frequency
1.671e-05
Filtering AF
0 (None)
Allele Count
2 / 119714
UCSC
17-78188471-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 1 65442 0 1.528e-05
East Asian 1 8610 0 0.0001161
Other 0 890 0 0
African 0 10242 0 0
Latino 0 11522 0 0
South Asian 0 16440 0 0
European (Finnish) 0 6568 0 0
Total 2 119714 0 1.671e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.