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17:78190860 G / A


Warning! This variant is only covered in 19820 individuals (adjusted allele number = 39640).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs104894636
Allele Frequency
0.000227
Filtering AF
0.000231 (European (Non-Finnish))
Allele Count
9 / 39640
UCSC
17-78190860-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 9 20294 0 0.0004435
East Asian 0 3184 0 0
Other 0 284 0 0
African 0 4338 0 0
Latino 0 1692 0 0
South Asian 0 9268 0 0
European (Finnish) 0 580 0 0
Total 9 39640 0 0.000227

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.