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17:7979005 T / C


Filter Status
PASS
dbSNP
rs199766569
Allele Frequency
0.0002718
Filtering AF
0.000272 (European (Non-Finnish))
Allele Count
33 / 121408
UCSC
17-7979005-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 5 transcripts in 2 genes:

missense
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 26 66740 0 0.0003896
East Asian 0 8654 0 0
Other 0 906 0 0
African 1 10404 0 9.612e-05
Latino 2 11578 0 0.0001727
South Asian 0 16512 0 0
European (Finnish) 4 6614 0 0.0006048
Total 33 121408 0 0.0002718

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.