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17:79892546 C / T


Warning! This variant is only covered in 11607 individuals (adjusted allele number = 23214).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs121918375
Allele Frequency
4.308e-05
Filtering AF
0 (None)
Allele Count
1 / 23214
UCSC
17-79892546-C-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 0 10050 0 0
East Asian 0 1078 0 0
Other 0 198 0 0
African 0 2690 0 0
Latino 0 862 0 0
South Asian 1 8122 0 0.0001231
European (Finnish) 0 214 0 0
Total 1 23214 0 4.308e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.