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18:21115443 T / C


Warning! This variant is only covered in 47332 individuals (adjusted allele number = 94664).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs28942105
Allele Frequency
2.113e-05
Filtering AF
6e-06 (European (Non-Finnish))
Allele Count
2 / 94664
UCSC
18-21115443-T-C
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 2 52968 0 3.776e-05
East Asian 0 6660 0 0
Other 0 702 0 0
African 0 7778 0 0
Latino 0 8574 0 0
South Asian 0 13068 0 0
European (Finnish) 0 4914 0 0
Total 2 94664 0 2.113e-05

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.