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18:29099850 G / A


Filter Status
PASS
dbSNP
rs121913013
Allele Frequency
0.001873
Filtering AF
0.002448 (European (Non-Finnish))
Allele Count
226 / 120676
UCSC
18-29099850-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 2 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 185 66660 1 0.002775
East Asian 2 8622 0 0.000232
Other 1 898 0 0.001114
African 3 9802 0 0.0003061
Latino 27 11570 0 0.002334
South Asian 4 16512 0 0.0002422
European (Finnish) 4 6612 1 0.000605
Total 226 120676 2 0.001873

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.