Interested in working on the development of this resource? Apply here.

18:29172865 G / A


Filter Status
PASS
dbSNP
rs1800458
Allele Frequency
0.04953
Filtering AF
0.06925 (European (Non-Finnish))
Allele Count
6013 / 121400
UCSC
18-29172865-G-A
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 3 transcripts in 1 genes:

missense
non coding transcript exon
Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 4734 66736 188 0.07094
East Asian 2 8654 0 0.0002311
Other 36 908 2 0.03965
African 145 10406 2 0.01393
Latino 260 11574 1 0.02246
South Asian 215 16508 3 0.01302
European (Finnish) 621 6614 28 0.09389
Total 6013 121400 224 0.04953

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.