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19:1650134 A / G


Warning! This variant is only covered in 11099 individuals (adjusted allele number = 22198).
This means that the site is covered in fewer than 80% of the individuals in ExAC, which may indicate a low-quality site.


Filter Status
PASS
dbSNP
rs1860661
Allele Frequency
0.5724
Filtering AF
0.8233 (East Asian)
Allele Count
12707 / 22198
UCSC
19-1650134-A-G
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 3647 9782 654 0.3728
East Asian 1005 1158 436 0.8679
Other 97 192 22 0.5052
African 2193 2658 908 0.8251
Latino 235 376 74 0.625
South Asian 5496 7924 1940 0.6936
European (Finnish) 34 108 5 0.3148
Total 12707 22198 4039 0.5724

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.