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19:33353061 G / T


Filter Status
PASS
dbSNP
rs1007160
Allele Frequency
0.2971
Filtering AF
0.3329 (European (Non-Finnish))
Allele Count
36030 / 121270
UCSC
19-33353061-G-T
ClinVar
Click to search for variant in Clinvar
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Annotations

This variant falls on 7 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.
Population Frequencies
Population Allele Count Allele Number Number of Homozygotes Allele Frequency
European (Non-Finnish) 22442 66666 3833 0.3366
East Asian 2382 8638 332 0.2758
Other 278 908 49 0.3062
African 3225 10388 504 0.3105
Latino 1730 11556 154 0.1497
South Asian 3466 16502 404 0.21
European (Finnish) 2507 6612 496 0.3792
Total 36030 121270 5772 0.2971

Read Data

This interactive IGV.js visualization shows reads that went into calling this variant.
Note: These are reassembled reads produced by GATK HaplotypeCaller --bamOutput so they accurately represent what HaplotypeCaller was seeing when it called this variant.